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  5. LOC_Os05g31920.2

LOC_Os05g31920.2 (LOC_Os05g31920)


Aliases : LOC_Os05g31920

Description : PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana (sp|q947d2|praf1_arath : 870.0)


Gene families : OG0000592 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g31920.2

Target Alias Description ECC score Gene Family Method Actions
AT1G76950 PRAF1 Regulator of chromosome condensation (RCC1) family with... 0.08 OrthoFinder output from all 47 species
AT3G23270 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 OrthoFinder output from all 47 species
AT4G14368 No alias Regulator of chromosome condensation (RCC1) family protein 0.05 OrthoFinder output from all 47 species
Aev_g11458 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g14846 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04496 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72134.t1 Aspi01Gene72134 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11326 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g17460 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01001675001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Gb_27545 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Lfl_g05030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g19874 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_136157g0010 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Msp_g09378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017246 No alias not classified & original description: CDS=1-3951 0.02 OrthoFinder output from all 47 species
Smo112120 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Solyc03g005590.2.1 Solyc03g005590 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Solyc12g099740.2.1 Solyc12g099740 PH, RCC1 and FYVE domains-containing protein 1... 0.05 OrthoFinder output from all 47 species
Zm00001e007456_P003 PRAF1, Zm00001e007456 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Zm00001e015467_P001 Zm00001e015467 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Zm00001e023246_P001 Zm00001e023246 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Zm00001e028312_P001 Zm00001e028312 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Zm00001e029685_P002 PRAF1, Zm00001e029685 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR013591 Brevis_radix_dom 1013 1068
IPR000306 Znf_FYVE 656 722
IPR027988 BRX_N 906 933
IPR000408 Reg_chr_condens 605 652
IPR000408 Reg_chr_condens 380 431
IPR000408 Reg_chr_condens 499 548
IPR000408 Reg_chr_condens 329 377
IPR000408 Reg_chr_condens 436 484
IPR000408 Reg_chr_condens 551 600
No external refs found!