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  5. LOC_Os05g30140.1

LOC_Os05g30140.1 (SR30, ATSRP30,...)


Aliases : SR30, ATSRP30, At-SR30, LOC_Os05g30140

Description : SR30/34 RNA splicing factor


Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g30140.1

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0241.g059740 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description:... 0.02 OrthoFinder output from all 47 species
Cba_g33525 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g082380.4.1 At-SR34a, SR34a,... SR30/34 RNA splicing factor 0.04 OrthoFinder output from all 47 species
Solyc06g009060.4.1 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Zm00001e017529_P003 SR30, ATSRP30,... SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005548 phospholipid transporter activity IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0007009 plasma membrane organization IEP HCCA
BP GO:0015748 organophosphate ester transport IEP HCCA
BP GO:0015914 phospholipid transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
BP GO:0017121 plasma membrane phospholipid scrambling IEP HCCA
MF GO:0017128 phospholipid scramblase activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0034204 lipid translocation IEP HCCA
BP GO:0045332 phospholipid translocation IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0097035 regulation of membrane lipid distribution IEP HCCA
MF GO:0140303 intramembrane lipid transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 76
IPR000504 RRM_dom 110 172
No external refs found!