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  5. LOC_Os05g30010.1

LOC_Os05g30010.1 (LOC_Os05g30010)


Aliases : LOC_Os05g30010

Description : Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus (sp|c6l7u1|lin1_lotja : 284.0)


Gene families : OG0002525 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002525_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g30010.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00110960 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00041p00198080 evm_27.TU.AmTr_v1... External stimuli response.biotic... 0.02 OrthoFinder output from all 47 species
AMTR_s00044p00102360 evm_27.TU.AmTr_v1... Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula 0.02 OrthoFinder output from all 47 species
Aob_g17003 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01035145001 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.03 OrthoFinder output from all 47 species
Gb_38779 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.02 OrthoFinder output from all 47 species
MA_1171557g0010 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.06 OrthoFinder output from all 47 species
MA_15009g0010 PUB26 Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.06 OrthoFinder output from all 47 species
Ore_g25160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19454 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g41495 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g49606 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g066740.3.1 Solyc01g066740 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.04 OrthoFinder output from all 47 species
Zm00001e016398_P001 Zm00001e016398 ubiquitin E3 ligase (CERBERUS/LIN) 0.02 OrthoFinder output from all 47 species
Zm00001e031427_P002 Zm00001e031427 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005484 SNAP receptor activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 1049 1084
No external refs found!