1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os05g29860.2

LOC_Os05g29860.2 (SAMT1, SAMC1, LOC_Os05g29860)


Aliases : SAMT1, SAMC1, LOC_Os05g29860

Description : solute transporter (MTCC)


Gene families : OG0003529 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003529_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g29860.2
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
Aop_g13218 SAMT1, SAMC1 solute transporter *(MTCC) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0093.g043240 SAMT1, SAMC1 solute transporter *(MTCC) & original description: CDS=1-1059 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021319.17 SAMT1, SAMC1 Solute transport.carrier-mediated transport.MC-type... 0.02 OrthoFinder output from all 47 species
Cre06.g286250 SAMT1, SAMC1 Solute transport.carrier-mediated transport.MC-type... 0.05 OrthoFinder output from all 47 species
GSVIVT01022254001 SAMT1, SAMC1 Solute transport.carrier-mediated transport.MC-type... 0.08 OrthoFinder output from all 47 species
Lfl_g02777 SAMT1, SAMC1 solute transporter *(MTCC) & original description: none 0.04 OrthoFinder output from all 47 species
Mp8g05870.1 SAMT1, SAMC1 solute transporter (MTCC) 0.17 OrthoFinder output from all 47 species
Pir_g19597 SAMT1, SAMC1 solute transporter *(MTCC) & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c12_10690V3.1 SAMT1, SAMC1,... S-adenosylmethionine carrier 1 0.02 OrthoFinder output from all 47 species
Sam_g14466 No alias solute transporter *(MTCC) & original description: none 0.02 OrthoFinder output from all 47 species
Smo146160 SAMT1, SAMC1 Solute transport.carrier-mediated transport.MC-type... 0.04 OrthoFinder output from all 47 species
Solyc04g051580.4.1 SAMT1, SAMC1,... solute transporter (MTCC) 0.12 OrthoFinder output from all 47 species
Tin_g12648 SAMT1, SAMC1 solute transporter *(MTCC) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004418 hydroxymethylbilane synthase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR018108 Mitochondrial_sb/sol_carrier 20 90
IPR018108 Mitochondrial_sb/sol_carrier 96 176
IPR018108 Mitochondrial_sb/sol_carrier 191 276
No external refs found!