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  5. LOC_Os05g22614.1

LOC_Os05g22614.1 (PTAC16, LOC_Os05g22614)


Aliases : PTAC16, LOC_Os05g22614

Description : TAC16 cofactor of plastid-encoded RNA polymerase


Gene families : OG0007234 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007234_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g22614.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00257120 PTAC16,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.08 OrthoFinder output from all 47 species
AT3G46780 PTAC16 plastid transcriptionally active 16 0.08 OrthoFinder output from all 47 species
Adi_g011791 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.02 OrthoFinder output from all 47 species
Aev_g02347 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.02 OrthoFinder output from all 47 species
Als_g03152 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.03 OrthoFinder output from all 47 species
Aob_g18050 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.03 OrthoFinder output from all 47 species
Aop_g68943 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.06 OrthoFinder output from all 47 species
Aspi01Gene18545.t1 PTAC16, Aspi01Gene18545 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.02 OrthoFinder output from all 47 species
Cba_g03987 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.02 OrthoFinder output from all 47 species
Ceric.19G051100.1 PTAC16, Ceric.19G051100 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.1 OrthoFinder output from all 47 species
Cre02.g081250 No alias No description available 0.07 OrthoFinder output from all 47 species
Dac_g08836 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.08 OrthoFinder output from all 47 species
Dcu_g01601 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.02 OrthoFinder output from all 47 species
Dde_g25352 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.07 OrthoFinder output from all 47 species
Ehy_g03814 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.04 OrthoFinder output from all 47 species
GSVIVT01024905001 PTAC16 RNA biosynthesis.organelle machineries.RNA polymerase... 0.06 OrthoFinder output from all 47 species
Len_g15964 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.06 OrthoFinder output from all 47 species
Lfl_g39154 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.05 OrthoFinder output from all 47 species
MA_806g0020 PTAC16 TAC16 cofactor of plastid-encoded RNA polymerase 0.06 OrthoFinder output from all 47 species
Mp8g16460.1 PTAC16 TAC16 cofactor of plastid-encoded RNA polymerase 0.09 OrthoFinder output from all 47 species
Msp_g05519 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.03 OrthoFinder output from all 47 species
Nbi_g10293 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.04 OrthoFinder output from all 47 species
Ore_g05533 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.06 OrthoFinder output from all 47 species
Ore_g05534 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.05 OrthoFinder output from all 47 species
Pir_g07718 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.05 OrthoFinder output from all 47 species
Pnu_g17360 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.04 OrthoFinder output from all 47 species
Solyc06g005710.3.1 PTAC16, Solyc06g005710 TAC16 cofactor of plastid-encoded RNA polymerase 0.05 OrthoFinder output from all 47 species
Spa_g56471 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.07 OrthoFinder output from all 47 species
Tin_g08369 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.05 OrthoFinder output from all 47 species
Zm00001e026770_P002 PTAC16, Zm00001e026770 TAC16 cofactor of plastid-encoded RNA polymerase 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004618 phosphoglycerate kinase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006541 glutamine metabolic process IEP HCCA
BP GO:0006542 glutamine biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008716 D-alanine-D-alanine ligase activity IEP HCCA
MF GO:0008883 glutamyl-tRNA reductase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
MF GO:0016851 magnesium chelatase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP HCCA
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 94 309
No external refs found!