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  5. LOC_Os05g19970.1

LOC_Os05g19970.1 (LOC_Os05g19970)


Aliases : LOC_Os05g19970

Description : C2H2 zinc finger transcription factor


Gene families : OG0001832 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001832_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g19970.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00184570 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 OrthoFinder output from all 47 species
Aob_g05330 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.35G041900.1 Ceric.35G041900 E3 ubiquitin ligase *(SR1) & original description:... 0.04 OrthoFinder output from all 47 species
GSVIVT01028201001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 OrthoFinder output from all 47 species
Lfl_g27799 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g01275 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g17227 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0209.g025867 No alias E3 ubiquitin ligase *(SR1) & original description: CDS=308-2596 0.02 OrthoFinder output from all 47 species
Sam_g06739 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!