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  5. LOC_Os05g19270.1

LOC_Os05g19270.1 (ATMSH2, MSH2, LOC_Os05g19270)


Aliases : ATMSH2, MSH2, LOC_Os05g19270

Description : component MSH2 of MSH2-x mismatch repair heterodimers


Gene families : OG0004193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g19270.1

Target Alias Description ECC score Gene Family Method Actions
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 0.03 OrthoFinder output from all 47 species
Ceric.01G010000.1 ATMSH2, MSH2,... component *(MSH2) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001224.8 ATMSH2, MSH2 DNA damage response.DNA repair mechanisms.mismatch... 0.01 OrthoFinder output from all 47 species
Cre01.g003463 ATMSH2, MSH2 DNA mismatch repair protein MSH2 OS=Zea mays 0.03 OrthoFinder output from all 47 species
Dac_g10467 ATMSH2, MSH2 component *(MSH2) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species
Gb_33909 ATMSH2, MSH2 component MSH2 of MSH2-x mismatch repair heterodimers 0.03 OrthoFinder output from all 47 species
MA_10431416g0010 ATMSH2, MSH2 DNA mismatch repair protein MSH2 OS=Zea mays... 0.05 OrthoFinder output from all 47 species
MA_59360g0010 ATMSH2, MSH2 component MSH2 of MSH2-x mismatch repair heterodimers 0.02 OrthoFinder output from all 47 species
Mp4g08420.1 ATMSH2, MSH2 component MSH2 of MSH2-x mismatch repair heterodimers 0.07 OrthoFinder output from all 47 species
Solyc06g069230.3.1 ATMSH2, MSH2,... component MSH2 of MSH2-x mismatch repair heterodimers 0.03 OrthoFinder output from all 47 species
Zm00001e035455_P001 ATMSH2, MSH2,... component MSH2 of MSH2-x mismatch repair heterodimers 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR007696 DNA_mismatch_repair_MutS_core 302 607
IPR007695 DNA_mismatch_repair_MutS-lik_N 25 130
IPR000432 DNA_mismatch_repair_MutS_C 663 861
IPR007861 DNA_mismatch_repair_MutS_clamp 471 564
IPR007860 DNA_mmatch_repair_MutS_con_dom 154 285
No external refs found!