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  5. LOC_Os05g12580.1

LOC_Os05g12580.1 (LOC_Os05g12580)


Aliases : LOC_Os05g12580

Description : no hits & (original description: none)


Gene families : OG0003275 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003275_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g12580.1
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0011.g012680 No alias not classified & original description: CDS=53-286 0.06 OrthoFinder output from all 47 species
GSVIVT01027049001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_06646 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_120230g0010 AtAGP20, AGP20 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001701 ATAGP22, AGP22 not classified & original description: CDS=1-333 0.04 OrthoFinder output from all 47 species
Spa_g03352 AGP41 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g49189 AGP16, ATAGP16 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR009424 AGP16/20/22/41 24 56
No external refs found!