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  5. LOC_Os05g11980.1

LOC_Os05g11980.1 (ATIM, LOC_Os05g11980)


Aliases : ATIM, LOC_Os05g11980

Description : no hits & (original description: none)


Gene families : OG0005553 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005553_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g11980.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00055250 ATIM,... No description available 0.07 OrthoFinder output from all 47 species
Aop_g38709 ATIM not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0007.g010532 ATIM not classified & original description: CDS=124-3744 0.05 OrthoFinder output from all 47 species
Ceric.02G004400.1 ATIM, Ceric.02G004400 not classified & original description: pacid=50585680... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001154.43 No alias No description available 0.05 OrthoFinder output from all 47 species
Cre06.g284850 ATIM No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01028757001 ATIM No description available 0.09 OrthoFinder output from all 47 species
Gb_19077 ATIM no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Gb_19078 ATIM no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10435367g0010 ATIM no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_869337g0010 ATIM no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g22100.1 ATIM no hits & (original description: none) 0.13 OrthoFinder output from all 47 species
Nbi_g08196 ATIM not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc03g007800.3.1 ATIM, Solyc03g007800 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Spa_g37319 ATIM not classified & original description: none 0.11 OrthoFinder output from all 47 species
Zm00001e032472_P001 ATIM, Zm00001e032472 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030915 Smc5-Smc6 complex IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0106068 SUMO ligase complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR007725 TIMELESS_C 677 996
IPR006906 Timeless_N 27 250
No external refs found!