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  5. LOC_Os05g11860.1

LOC_Os05g11860.1 (LOC_Os05g11860)


Aliases : LOC_Os05g11860

Description : RING-H2-class E3 ligase


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g11860.1
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00172400 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
AMTR_s00059p00176670 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AMTR_s00152p00054630 RHA2A,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT1G53010 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G72200 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G35000 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G10910 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G09100 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G10160 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G24015 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G41440 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G42200 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g012488 RHA3A not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g020541 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Als_g10161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70816 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene23680.t1 Aspi01Gene23680 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65265.t1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene65865.t1 Aspi01Gene65865 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g43673 No alias E3 ubiquitin ligase *(BRH) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.20G013600.1 ATL5, Ceric.20G013600 not classified & original description: pacid=50566012... 0.02 OrthoFinder output from all 47 species
Ceric.22G069000.1 Ceric.22G069000 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ceric.38G004700.1 Ceric.38G004700 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dcu_g14309 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dcu_g40181 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g06659 ATL5 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dde_g23804 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g41558 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ehy_g07523 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ehy_g25748 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
GSVIVT01027769001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Gb_14785 No alias RING-H2 finger protein ATL78 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os01g16120.1 RHA2A, LOC_Os01g16120 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os04g16970.1 LOC_Os04g16970 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os10g30310.1 LOC_Os10g30310 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os10g42390.1 LOC_Os10g42390 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
MA_10021g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_10429091g0010 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_10436028g0020 No alias RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
MA_111727g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_201864g0010 RHA3A RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
MA_222729g0010 ATL2, TL2 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_391931g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_6475030g0010 ATL3 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
MA_68992g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_96368g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Mp2g11860.1 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Msp_g00957 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g12835 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Nbi_g17181 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ore_g10431 XERICO not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g52881 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Solyc01g006910.4.1 Solyc01g006910 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc03g123680.1.1 Solyc03g123680 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc06g063110.3.1 Solyc06g063110 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
Solyc12g094690.1.1 Solyc12g094690 RING-H2 finger protein ATL8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g03047 ATL8 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Spa_g24936 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Spa_g51562 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e007157_P001 Zm00001e007157 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e008560_P001 RHA2A, Zm00001e008560 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e015495_P001 Zm00001e015495 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e023260_P001 Zm00001e023260 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e023515_P001 Zm00001e023515 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e034025_P001 RHA3A, Zm00001e034025 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e034421_P001 ATL6, Zm00001e034421 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e038107_P001 Zm00001e038107 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e041824_P001 ATL43, Zm00001e041824 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004512 inositol-3-phosphate synthase activity IEP HCCA
BP GO:0006020 inositol metabolic process IEP HCCA
BP GO:0006021 inositol biosynthetic process IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046173 polyol biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 164 207
No external refs found!