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  5. LOC_Os05g08360.1

LOC_Os05g08360.1 (FIB1, ATFIB1, ATFBR1,...)


Aliases : FIB1, ATFIB1, ATFBR1, FBR1, SKIP7, LOC_Os05g08360

Description : methyltransferase component Nop1/fibrillarin of snoRNP rRNA methylation complex


Gene families : OG0004335 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004335_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g08360.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00218020 FIB1, ATFIB1,... RNA processing.RNA modification.rRNA/tRNA... 0.1 OrthoFinder output from all 47 species
AT4G25630 FIB2, ATFIB2 fibrillarin 2 0.18 OrthoFinder output from all 47 species
AT5G52470 FIB1, ATFIB1,... fibrillarin 1 0.09 OrthoFinder output from all 47 species
Adi_g076310 FIB1, ATFIB1,... methyltransferase component *(Nop1/fibrillarin) of... 0.02 OrthoFinder output from all 47 species
Ala_g04107 FIB2, ATFIB2 methyltransferase component *(Nop1/fibrillarin) of... 0.03 OrthoFinder output from all 47 species
Aop_g18685 FIB1, ATFIB1,... methyltransferase component *(Nop1/fibrillarin) of... 0.03 OrthoFinder output from all 47 species
Aspi01Gene46159.t1 FIB1, ATFIB1,... methyltransferase component *(Nop1/fibrillarin) of... 0.05 OrthoFinder output from all 47 species
Azfi_s0093.g043290 FIB2, ATFIB2 not classified & original description: CDS=212-970 0.06 OrthoFinder output from all 47 species
Cba_g27536 FIB2, ATFIB2 methyltransferase component *(Nop1/fibrillarin) of... 0.02 OrthoFinder output from all 47 species
Ceric.01G068400.1 FIB1, ATFIB1,... methyltransferase component *(Nop1/fibrillarin) of... 0.06 OrthoFinder output from all 47 species
Ceric.02G070500.1 FIB1, ATFIB1,... methyltransferase component *(Nop1/fibrillarin) of... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001049.16 FIB1, ATFIB1,... RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
Cre02.g077300 FIB2, ATFIB2 RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder output from all 47 species
Dac_g15986 FIB1, ATFIB1,... methyltransferase component *(Nop1/fibrillarin) of... 0.05 OrthoFinder output from all 47 species
Dcu_g15289 FIB2, ATFIB2 methyltransferase component *(Nop1/fibrillarin) of... 0.04 OrthoFinder output from all 47 species
GSVIVT01028887001 FIB1, ATFIB1,... RNA processing.RNA modification.rRNA/tRNA... 0.09 OrthoFinder output from all 47 species
Gb_33899 FIB2, ATFIB2 methyltransferase component Nop1/fibrillarin of snoRNP... 0.06 OrthoFinder output from all 47 species
MA_124463g0010 FIB2, ATFIB2 methyltransferase component Nop1/fibrillarin of snoRNP... 0.11 OrthoFinder output from all 47 species
Mp2g12880.1 FIB1, ATFIB1,... methyltransferase component Nop1/fibrillarin of snoRNP... 0.02 OrthoFinder output from all 47 species
Nbi_g41181 FIB2, ATFIB2 methyltransferase component *(Nop1/fibrillarin) of... 0.04 OrthoFinder output from all 47 species
Pir_g60296 FIB1, ATFIB1,... methyltransferase component *(Nop1/fibrillarin) of... 0.04 OrthoFinder output from all 47 species
Pp3c16_12410V3.1 FIB2, ATFIB2,... fibrillarin 2 0.02 OrthoFinder output from all 47 species
Pp3c27_4160V3.1 FIB2, ATFIB2, Pp3c27_4160 fibrillarin 2 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g016024 FIB2, ATFIB2 not classified & original description: CDS=123-851 0.03 OrthoFinder output from all 47 species
Sam_g13274 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.1 OrthoFinder output from all 47 species
Smo171051 FIB2, ATFIB2 RNA processing.RNA modification.rRNA/tRNA... 0.09 OrthoFinder output from all 47 species
Solyc03g025270.3.1 FIB2, ATFIB2,... methyltransferase component Nop1/fibrillarin of snoRNP... 0.21 OrthoFinder output from all 47 species
Spa_g31178 FIB2, ATFIB2 methyltransferase component *(Nop1/fibrillarin) of... 0.07 OrthoFinder output from all 47 species
Zm00001e023572_P001 FIB1, ATFIB1,... methyltransferase component Nop1/fibrillarin of snoRNP... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR000692 Fibrillarin 75 300
No external refs found!