LOC_Os05g06890.1 (ATCRSH, CRSH, LOC_Os05g06890)

Aliases : ATCRSH, CRSH, LOC_Os05g06890

Description : Probable GTP diphosphokinase CRSH1, chloroplastic OS=Oryza sativa subsp. japonica (sp|q6atb4|crsh1_orysj : 893.0)

Gene families : OG0003616 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003616_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g06890.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g017331	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g17646	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g16932	ATCRSH, CRSH	ppGpp synthetase *(CRSH) & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g17677	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0090.g042641	ATCRSH, CRSH	ppGpp synthetase *(CRSH) & original description: CDS=758-4711	0.05	OrthoFinder output from all 47 species
Ceric.30G071200.1	Ceric.30G071200	not classified & original description: pacid=50608643...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000042.103	No alias	Probable GTP diphosphokinase CRSH3, chloroplastic...	0.01	OrthoFinder output from all 47 species
Dcu_g02034	ATCRSH, CRSH	ppGpp synthetase *(CRSH) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g47140	ATCRSH, CRSH	ppGpp synthetase *(CRSH) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g19553	ATCRSH, CRSH	ppGpp synthetase *(CRSH) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g50135	No alias	ppGpp synthetase *(CRSH) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g34190	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e031121_P001	ATCRSH, CRSH,...	Probable GTP diphosphokinase CRSH1, chloroplastic...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0033865	nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005525	GTP binding	IEP	HCCA
MF	GO:0008942	nitrite reductase [NAD(P)H] activity	IEP	HCCA
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0046857	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	IEP	HCCA
MF	GO:0098809	nitrite reductase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007685	RelA_SpoT	316	438
IPR002048	EF_hand_dom	480	535

External Links

No external refs found!

LOC_Os05g06890.1 (ATCRSH, CRSH, LOC_Os05g06890)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation