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  5. LOC_Os05g06120.1

LOC_Os05g06120.1 (PFU2, UBC23, LOC_Os05g06120)


Aliases : PFU2, UBC23, LOC_Os05g06120

Description : Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana (sp|q9zvx1|ubc23_arath : 273.0)


Gene families : OG0001231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001231_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g06120.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00015p00258290 UBC24, PHO2,... Probable ubiquitin-conjugating enzyme E2 24... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000939.12 No alias Putative ubiquitin-conjugating enzyme E2 38... 0.02 OrthoFinder output from all 47 species
Gb_01294 PFU2, UBC23 ubiquitin-conjugating E2 protein (PHO2) 0.03 OrthoFinder output from all 47 species
Pir_g22176 UBC25, PFU1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR000608 UBQ-conjugat_E2 782 917
No external refs found!