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  5. LOC_Os05g05300.1

LOC_Os05g05300.1 (LOC_Os05g05300)


Aliases : LOC_Os05g05300

Description : Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana (sp|q67xl4|y3544_arath : 102.0)


Gene families : OG0001914 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001914_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g05300.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00218010 evm_27.TU.AmTr_v1... Uncharacterized CRM domain-containing protein At3g25440,... 0.04 OrthoFinder output from all 47 species
AT3G27550 No alias RNA-binding CRS1 / YhbY (CRM) domain protein 0.04 OrthoFinder output from all 47 species
Aop_g09890 No alias splicing factor *(CFM9) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G126500.1 Ceric.01G126500 splicing factor *(CFM9) & original description:... 0.04 OrthoFinder output from all 47 species
Ehy_g12917 No alias splicing factor *(CFM9) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01010789001 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.05 OrthoFinder output from all 47 species
MA_10427237g0020 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.03 OrthoFinder output from all 47 species
Ore_g32275 No alias splicing factor *(CFM9) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017803 No alias splicing factor *(CFM9) & original description: CDS=100-1332 0.02 OrthoFinder output from all 47 species
Solyc06g082990.4.1 Solyc06g082990 Uncharacterized CRM domain-containing protein At3g25440,... 0.03 OrthoFinder output from all 47 species
Solyc09g005270.3.1 Solyc09g005270 Uncharacterized CRM domain-containing protein At3g25440,... 0.03 OrthoFinder output from all 47 species
Zm00001e027517_P001 Zm00001e027517 Uncharacterized CRM domain-containing protein At3g25440,... 0.07 OrthoFinder output from all 47 species
Zm00001e040411_P001 Zm00001e040411 Uncharacterized CRM domain-containing protein At3g25440,... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 144 228
No external refs found!