LOC_Os05g04610.1 (ATPGP4, PGP4, ABCB4,...)

Aliases : ATPGP4, PGP4, ABCB4, MDR4, LOC_Os05g04610

Description : subfamily ABCB transporter

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g04610.1

Target	Alias	Description	ECC score	Gene Family Method
AT3G28360	PGP16	P-glycoprotein 16	0.05	OrthoFinder output from all 47 species
Als_g07511	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Als_g18810	PGP2	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g06806	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g22258	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene42791.t1	PGP21, Aspi01Gene42791	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene45621.t1	PGP11, Aspi01Gene45621	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene52651.t1	PGP2, Aspi01Gene52651	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene62053.t1	ABCB19,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene62054.t1	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene62055.t2	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s2496.g111845	ABCB19,...	subfamily ABCB transporter & original description: CDS=142-3066	0.02	OrthoFinder output from all 47 species
Dde_g29451	ABCB19,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g31525	ATPGP4, PGP4, ABCB4, MDR4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g46847	PGP11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01007586001	No alias	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
GSVIVT01009946001	ABCB14, ATABCB14, PGP14	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Gb_08614	PGP11	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Len_g57621	PGP11	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
MA_10429045g0010	No alias	ABC transporter B family member 15 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
MA_10432922g0010	No alias	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
MA_111099g0010	No alias	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
MA_1824g0010	No alias	Putative multidrug resistance protein OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Msp_g34237	ABCB19,...	subfamily ABCB transporter & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g12991	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g16181	PGP11	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c17_16450V3.1	ABCB19,...	ATP binding cassette subfamily B19	0.01	OrthoFinder output from all 47 species
Pp3c1_7210V3.1	ABCB19,...	ATP binding cassette subfamily B19	0.01	OrthoFinder output from all 47 species
Ppi_g03992	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g08631	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g34567	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g48720	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Smo176522	ATPGP4, PGP4, ABCB4, MDR4	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Solyc03g005860.4.1	PGP11, Solyc03g005860	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
Tin_g21567	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	1	228
IPR003439	ABC_transporter-like_ATP-bd	298	446

External Links

No external refs found!

LOC_Os05g04610.1 (ATPGP4, PGP4, ABCB4,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation