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  5. LOC_Os05g04170.1

LOC_Os05g04170.1 (CER8, LACS1, LOC_Os05g04170)


Aliases : CER8, LACS1, LOC_Os05g04170

Description : Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana (sp|o22898|lacs1_arath : 859.0) & Enzyme classification.EC_6 ligases.EC_6.2 ligase forming carbon-sulfur bond(50.6.2 : 431.9)


Gene families : OG0000612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g04170.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00114270 CER8, LACS1,... Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00003p00117760 CER8, LACS1,... Enzyme classification.EC_6 ligases.EC_6.2 ligase forming... 0.02 OrthoFinder output from all 47 species
AT1G49430 LRD2, LACS2 long-chain acyl-CoA synthetase 2 0.05 OrthoFinder output from all 47 species
AT2G47240 CER8, LACS1 AMP-dependent synthetase and ligase family protein 0.04 OrthoFinder output from all 47 species
AT2G47245 No alias No description available 0.03 OrthoFinder output from all 47 species
Ceric.1Z010900.1 LACS4, Ceric.1Z010900 not classified & original description: pacid=50596888... 0.02 OrthoFinder output from all 47 species
Ceric.24G023000.1 LACS4, Ceric.24G023000 EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Dac_g11566 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01031892001 LRD2, LACS2 Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_09959 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Gb_32132 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Lfl_g08320 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
MA_10432761g0010 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_839621g0010 No alias Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g11320 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Pp3c6_11410V3.1 LACS4, Pp3c6_11410 AMP-dependent synthetase and ligase family protein 0.01 OrthoFinder output from all 47 species
Ppi_g17117 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Sam_g13871 No alias EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Sam_g15770 No alias EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Sam_g16833 No alias EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Solyc01g079240.3.1 CER8, LACS1,... Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g26451 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Zm00001e024608_P001 LRD2, LACS2,... Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
Zm00001e036457_P004 LACS4, Zm00001e036457 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e040332_P001 CER8, LACS1,... Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig_com 56 526
No external refs found!