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  5. LOC_Os05g04160.1

LOC_Os05g04160.1 (LOC_Os05g04160)


Aliases : LOC_Os05g04160

Description : Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana (sp|q9m302|pp270_arath : 483.0)


Gene families : OG0001250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001250_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g04160.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00258750 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g46100... 0.03 OrthoFinder output from all 47 species
AMTR_s00010p00259780 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00022p00130870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14580,... 0.02 OrthoFinder output from all 47 species
AMTR_s00025p00221220 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g07740,... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00104100 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g61870,... 0.04 OrthoFinder output from all 47 species
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.04 OrthoFinder output from all 47 species
AMTR_s00032p00197250 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g55890,... 0.03 OrthoFinder output from all 47 species
AMTR_s00037p00138240 EMB1025,... Pentatricopeptide repeat-containing protein At4g20090... 0.04 OrthoFinder output from all 47 species
AMTR_s00066p00107660 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00078p00041370 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g48810... 0.02 OrthoFinder output from all 47 species
AMTR_s00111p00140430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g01400,... 0.08 OrthoFinder output from all 47 species
AMTR_s00135p00057260 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g18475... 0.01 OrthoFinder output from all 47 species
AMTR_s00143p00105190 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00221p00020810 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.02 OrthoFinder output from all 47 species
AT1G07740 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G74580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G17525 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G18520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
AT3G09060 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G13150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G14580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G48810 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G16420 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 OrthoFinder output from all 47 species
AT5G46100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G64320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 OrthoFinder output from all 47 species
Adi_g060042 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0177.g056145 No alias not classified & original description: CDS=1-1962 0.02 OrthoFinder output from all 47 species
Cba_g01242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.22G014000.1 Ceric.22G014000 not classified & original description: pacid=50615208... 0.03 OrthoFinder output from all 47 species
Dcu_g11618 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g09638 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008016001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
GSVIVT01011280001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 OrthoFinder output from all 47 species
GSVIVT01024665001 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.05 OrthoFinder output from all 47 species
GSVIVT01027435001 No alias Pentatricopeptide repeat-containing protein At1g05600... 0.14 OrthoFinder output from all 47 species
Gb_07822 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.06 OrthoFinder output from all 47 species
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.14 OrthoFinder output from all 47 species
Gb_12262 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.06 OrthoFinder output from all 47 species
Gb_14900 EMB1025 Pentatricopeptide repeat-containing protein At4g20090... 0.09 OrthoFinder output from all 47 species
Gb_21920 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.17 OrthoFinder output from all 47 species
Gb_23196 No alias Pentatricopeptide repeat-containing protein At1g05600... 0.03 OrthoFinder output from all 47 species
Gb_23263 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.04 OrthoFinder output from all 47 species
Gb_37573 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.06 OrthoFinder output from all 47 species
Gb_38400 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.03 OrthoFinder output from all 47 species
LOC_Os01g58080.1 PPR336, LOC_Os01g58080 PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.02 OrthoFinder output from all 47 species
LOC_Os01g63400.1 LOC_Os01g63400 Pentatricopeptide repeat-containing protein At3g09060... 0.01 OrthoFinder output from all 47 species
LOC_Os02g42210.1 LOC_Os02g42210 Pentatricopeptide repeat-containing protein At4g36680,... 0.02 OrthoFinder output from all 47 species
LOC_Os06g30420.1 EMB1025, LOC_Os06g30420 Pentatricopeptide repeat-containing protein At4g20090... 0.01 OrthoFinder output from all 47 species
LOC_Os08g39050.1 LOC_Os08g39050 Pentatricopeptide repeat-containing protein At1g80150,... 0.2 OrthoFinder output from all 47 species
MA_125741g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.02 OrthoFinder output from all 47 species
MA_131324g0010 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.06 OrthoFinder output from all 47 species
MA_137206g0010 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.02 OrthoFinder output from all 47 species
MA_17644g0010 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.07 OrthoFinder output from all 47 species
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 1.0 OrthoFinder output from all 47 species
MA_57592g0010 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.09 OrthoFinder output from all 47 species
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.2 OrthoFinder output from all 47 species
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.17 OrthoFinder output from all 47 species
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.17 OrthoFinder output from all 47 species
Ore_g27863 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g012950 No alias not classified & original description: CDS=1-1968 0.02 OrthoFinder output from all 47 species
Solyc02g077650.2.1 Solyc02g077650 Pentatricopeptide repeat-containing protein At5g46100... 0.08 OrthoFinder output from all 47 species
Solyc02g079830.1.1 Solyc02g079830 Pentatricopeptide repeat-containing protein At3g13160,... 0.03 OrthoFinder output from all 47 species
Solyc02g081860.3.1 EMB1025, Solyc02g081860 Pentatricopeptide repeat-containing protein At4g20090... 0.04 OrthoFinder output from all 47 species
Solyc04g076070.1.1 Solyc04g076070 Pentatricopeptide repeat-containing protein At5g18475... 0.04 OrthoFinder output from all 47 species
Solyc05g012250.3.1 Solyc05g012250 Pentatricopeptide repeat-containing protein At1g80150,... 0.02 OrthoFinder output from all 47 species
Solyc09g014210.3.1 Solyc09g014210 Pentatricopeptide repeat-containing protein At3g09060... 0.04 OrthoFinder output from all 47 species
Solyc11g068470.3.1 Solyc11g068470 group-II intron mitochondrial splicing factor (MISF74) 0.08 OrthoFinder output from all 47 species
Solyc12g014330.1.1 Solyc12g014330 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc12g035170.3.1 Solyc12g035170 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Tin_g08209 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015190_P001 Zm00001e015190 Pentatricopeptide repeat-containing protein At2g18520,... 0.02 OrthoFinder output from all 47 species
Zm00001e019591_P001 PPR336, Zm00001e019591 PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.03 OrthoFinder output from all 47 species
Zm00001e027557_P001 Zm00001e027557 Pentatricopeptide repeat-containing protein At3g48810... 0.04 OrthoFinder output from all 47 species
Zm00001e028732_P001 Zm00001e028732 Pentatricopeptide repeat-containing protein At3g09060... 0.03 OrthoFinder output from all 47 species
Zm00001e028938_P001 Zm00001e028938 Pentatricopeptide repeat-containing protein At1g55890,... 0.01 OrthoFinder output from all 47 species
Zm00001e034625_P001 Zm00001e034625 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 503 533
IPR002885 Pentatricopeptide_repeat 243 300
IPR002885 Pentatricopeptide_repeat 186 215
IPR002885 Pentatricopeptide_repeat 392 423
IPR002885 Pentatricopeptide_repeat 535 584
IPR002885 Pentatricopeptide_repeat 325 373
IPR002885 Pentatricopeptide_repeat 120 169
IPR002885 Pentatricopeptide_repeat 430 478
No external refs found!