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  5. LOC_Os05g03910.1

LOC_Os05g03910.1 (TPR5, LOC_Os05g03910)


Aliases : TPR5, LOC_Os05g03910

Description : RPAP3 polymerase-II assembly factor


Gene families : OG0003637 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003637_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g03910.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AT1G56440 TPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g056787 TPR5 polymerase-II assembly factor *(RPAP3) & original... 0.02 OrthoFinder output from all 47 species
Als_g02491 TPR5 polymerase-II assembly factor *(RPAP3) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene29573.t1 TPR5, Aspi01Gene29573 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000194.44 Hop2 No description available 0.01 OrthoFinder output from all 47 species
Pir_g01630 TPR5 polymerase-II assembly factor *(RPAP3) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR025986 RPAP3-like_C 265 353
IPR019734 TPR_repeat 47 71
IPR019734 TPR_repeat 75 103
No external refs found!