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  5. LOC_Os05g02130.1

LOC_Os05g02130.1 (XBAT31, LOC_Os05g02130)


Aliases : XBAT31, LOC_Os05g02130

Description : RING-HC-class E3 ligase


Gene families : OG0000851 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000851_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g02130.1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Adi_g060605 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26319 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08783 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene30632.t1 XBAT31, Aspi01Gene30632 E3 ubiquitin ligase *(XBAT3) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08553 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01025459001 No alias No description available 0.03 OrthoFinder output from all 47 species
Ppi_g13359 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015667 XBAT31 not classified & original description: CDS=1-597 0.02 OrthoFinder output from all 47 species
Sam_g35773 No alias E3 ubiquitin ligase *(XBAT3) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc11g066020.2.1 XBAT31, Solyc11g066020 RING-HC-class E3 ligase 0.08 OrthoFinder output from all 47 species
Zm00001e038483_P001 XBAT31, Zm00001e038483 RING-HC-class E3 ligase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR020683 DUF3447 115 183
IPR020683 DUF3447 17 109
IPR002110 Ankyrin_rpt 196 221
No external refs found!