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  5. LOC_Os05g02040.1

LOC_Os05g02040.1 (RPA70C, ATRPA70C,...)


Aliases : RPA70C, ATRPA70C, LOC_Os05g02040

Description : component RPA1 of single-stranded-DNA binding RPA complex. component RPA1 of RPA presynaptic filament assembly factor complex


Gene families : OG0002229 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002229_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g02040.1

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene49949.t1 ATRPA70A, RPA1A,... component *(RPA1) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000823.18 No alias Replication protein A 70 kDa DNA-binding subunit E... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000823.19 ATRPA70A, RPA1A,... Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.01 OrthoFinder output from all 47 species
Cre17.g718850 ATRPA70A, RPA1A,... Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 906 921
IPR001878 Znf_CCHC 883 898
IPR001878 Znf_CCHC 860 875
IPR013955 Rep_factor-A_C 592 744
IPR007199 Rep_factor-A_N 5 109
IPR004365 NA-bd_OB_tRNA 320 403
IPR031657 REPA_OB_2 431 535
No external refs found!