LOC_Os02g12570.1

Description : component Clp1 of Cleavage Factor II (CF-IIm) complex

Gene families : OG_01_0004454 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004454_tree ,
OG_02_0004990 (LandPlants) Phylogenetic Tree(s): OG_02_0004990_tree ,
OG_03_0008944 (SeedPlants) Phylogenetic Tree(s): OG_03_0008944_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g12570.1
Cluster	HCCA: Cluster_353

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00146p00018170	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	Archaeplastida
Cre03.g194800	No alias	RNA processing.RNA 3-end polyadenylation.Cleavage Factor...	0.04	Archaeplastida
MA_136459g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Mp6g10380.1	No alias	component Clp1 of Cleavage Factor II (CF-IIm) complex	0.02	Archaeplastida
Zm00001e024954_P001	No alias	component Clp1 of Cleavage Factor II (CF-IIm) complex	0.06	Archaeplastida
AMTR_s00146p00018170	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	LandPlants
Mp6g10380.1	No alias	component Clp1 of Cleavage Factor II (CF-IIm) complex	0.02	LandPlants
Zm00001e024954_P001	No alias	component Clp1 of Cleavage Factor II (CF-IIm) complex	0.05	LandPlants
AMTR_s00146p00018170	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	SeedPlants
Zm00001e024954_P001	No alias	component Clp1 of Cleavage Factor II (CF-IIm) complex	0.05	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR032319	CLP1_P	128	316
IPR032324	Clp1_N	15	106
IPR010655	Clp1_C	321	431

External Links

No external refs found!