1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os05g01635.1

LOC_Os05g01635.1 (LOC_Os05g01635)


Aliases : LOC_Os05g01635

Description : Pentatricopeptide repeat-containing protein At3g51320 OS=Arabidopsis thaliana (sp|q0wvu0|pp278_arath : 279.0)


Gene families : OG0006286 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006286_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g01635.1
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00087070 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00024p00191430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
AT1G09220 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G33350 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G51320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G14170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G56310 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
GSVIVT01005196001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
GSVIVT01011479001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.04 OrthoFinder output from all 47 species
GSVIVT01012620001 No alias Pentatricopeptide repeat-containing protein At1g09220,... 0.02 OrthoFinder output from all 47 species
GSVIVT01015318001 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.05 OrthoFinder output from all 47 species
GSVIVT01024493001 No alias Pentatricopeptide repeat-containing protein At4g39952,... 0.06 OrthoFinder output from all 47 species
GSVIVT01025389001 OTP82 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species
GSVIVT01027634001 CRR4 Pentatricopeptide repeat-containing protein At2g45350,... 0.03 OrthoFinder output from all 47 species
GSVIVT01027951001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01035920001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.06 OrthoFinder output from all 47 species
Gb_33068 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
LOC_Os02g06880.1 LOC_Os02g06880 Pentatricopeptide repeat-containing protein At4g21065... 0.08 OrthoFinder output from all 47 species
LOC_Os02g53050.1 PDE247, CLB19,... RNA editing factor (CLB19) 0.06 OrthoFinder output from all 47 species
LOC_Os05g33920.1 LOC_Os05g33920 Pentatricopeptide repeat-containing protein At4g14170... 0.04 OrthoFinder output from all 47 species
MA_10248752g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc02g080350.1.1 Solyc02g080350 Pentatricopeptide repeat-containing protein At1g77170,... 0.08 OrthoFinder output from all 47 species
Solyc02g094125.1.1 Solyc02g094125 Pentatricopeptide repeat-containing protein At5g56310... 0.03 OrthoFinder output from all 47 species
Solyc05g006800.2.1 CRR28, Solyc05g006800 Pentatricopeptide repeat-containing protein At1g59720,... 0.03 OrthoFinder output from all 47 species
Solyc08g079640.3.1 OTP82, Solyc08g079640 Pentatricopeptide repeat-containing protein At3g51320... 0.03 OrthoFinder output from all 47 species
Solyc09g092150.1.1 MEF21, Solyc09g092150 RNA editing factor (MEF21) 0.04 OrthoFinder output from all 47 species
Solyc11g012570.3.1 Solyc11g012570 Pentatricopeptide repeat-containing protein At3g51320... 0.05 OrthoFinder output from all 47 species
Zm00001e000523_P001 CRR2, Zm00001e000523 Pentatricopeptide repeat-containing protein At5g15300... 0.05 OrthoFinder output from all 47 species
Zm00001e033388_P001 OTP84, Zm00001e033388 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 224 257
IPR002885 Pentatricopeptide_repeat 328 355
IPR002885 Pentatricopeptide_repeat 300 322
IPR002885 Pentatricopeptide_repeat 408 430
No external refs found!