LOC_Os05g01490.1 (RAB1C, ATRAB1C,...)

Aliases : RAB1C, ATRAB1C, ATRABD2C, LOC_Os05g01490

Description : D-class RAB GTPase

Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g01490.1

Target	Alias	Description	ECC score	Gene Family Method
AT4G17530	RAB1C, ATRAB1C, ATRABD2C	RAB GTPase homolog 1C	0.03	OrthoFinder output from all 47 species
Dac_g04081	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g18786	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g17943	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0127.g021845	ATRAB1A, ATRABD2B, RAB1A	not classified & original description: CDS=550-1089	0.02	OrthoFinder output from all 47 species
Sam_g35644	No alias	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g23605	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	10	170

External Links

No external refs found!