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  5. LOC_Os05g01250.1

LOC_Os05g01250.1 (VPS60.1, LOC_Os05g01250)


Aliases : VPS60.1, LOC_Os05g01250

Description : VPS60 associated protein of ESCRT-III complex


Gene families : OG0002554 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002554_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g01250.1

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021432.8 No alias Vesicle trafficking.endomembrane trafficking.ESCRT... 0.02 OrthoFinder output from all 47 species
GSVIVT01033955001 VPS60.1 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.04 OrthoFinder output from all 47 species
Ore_g30828 VPS60.1 associated protein of ESCRT-III complex *(VPS60) &... 0.02 OrthoFinder output from all 47 species
Sam_g11205 No alias associated protein of ESCRT-III complex *(VPS60) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR005024 Snf7_fam 12 207
No external refs found!