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  5. LOC_Os05g01230.1

LOC_Os05g01230.1 (VIM1, ORTH2, LOC_Os05g01230)


Aliases : VIM1, ORTH2, LOC_Os05g01230

Description : E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana (sp|q8vyz0|orth2_arath : 752.0)


Gene families : OG0003058 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003058_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os05g01230.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Adi_g085235 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.05 OrthoFinder output from all 47 species
Aob_g04282 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.04 OrthoFinder output from all 47 species
Dcu_g08296 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.02 OrthoFinder output from all 47 species
Zm00001e027679_P001 VIM1, ORTH2,... E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 134 172
IPR003105 SRA_YDG 266 414
IPR027370 Znf-RING_euk 505 538
No external refs found!