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  5. LOC_Os04g59620.1

LOC_Os04g59620.1 (CHR24, LOC_Os04g59620)


Aliases : CHR24, LOC_Os04g59620

Description : chromatin remodeling factor (ERCC6)


Gene families : OG0005354 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005354_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g59620.1

Target Alias Description ECC score Gene Family Method Actions
Aop_g13293 CHR24 chromatin remodeling factor *(ERCC6) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.22G065600.1 CHR24, Ceric.22G065600 not classified & original description: pacid=50613904... 0.02 OrthoFinder output from all 47 species
Dde_g09381 CHR24 chromatin remodeling factor *(ERCC6) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16240 CHR24 chromatin remodeling factor *(ERCC6) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g03168 CHR24 chromatin remodeling factor *(ERCC6) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g068280.3.1 CHR24, Solyc01g068280 chromatin remodeling factor (ERCC6) 0.02 OrthoFinder output from all 47 species
Spa_g24729 CHR24 chromatin remodeling factor *(ERCC6) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007521_P001 CHR24, Zm00001e007521 chromatin remodeling factor (ERCC6) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 237 349
IPR000330 SNF2_N 21 151
No external refs found!