LOC_Os04g56320.1 (LOC_Os04g56320)

Aliases : LOC_Os04g56320

Description : Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata (sp|q7x999|rca2_lartr : 249.0)

Gene families : OG0005577 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005577_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g56320.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g002854	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g06596	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Ala_g06168	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g16206	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g09667	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Aop_g14641	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g13522	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.08G032500.1	Ceric.08G032500	not classified & original description: pacid=50638582...	0.07	OrthoFinder output from all 47 species
Dac_g14854	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g24022	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Dde_g18676	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01016062001	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.09	OrthoFinder output from all 47 species
Len_g50097	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Lfl_g04649	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
MA_10428784g0010	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.07	OrthoFinder output from all 47 species
MA_379291g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp2g04090.1	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.03	OrthoFinder output from all 47 species
Msp_g02450	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g06629	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g19785	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g07975	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Pir_g58392	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Ppi_g45761	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020487	No alias	not classified & original description: CDS=305-1777	0.03	OrthoFinder output from all 47 species
Sam_g29423	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Sam_g49192	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Smo82367	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.09	OrthoFinder output from all 47 species
Solyc03g117850.4.1	Solyc03g117850	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.07	OrthoFinder output from all 47 species
Solyc11g027920.2.1	Solyc11g027920	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.05	OrthoFinder output from all 47 species
Tin_g21285	No alias	not classified & original description: none	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006536	glutamate metabolic process	IEP	HCCA
BP	GO:0006537	glutamate biosynthetic process	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
MF	GO:0015930	glutamate synthase activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
BP	GO:0017038	protein import	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	HCCA
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	2	124

External Links

No external refs found!

LOC_Os04g56320.1 (LOC_Os04g56320)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation