LOC_Os04g54930.1 (ABCB19, ATABCB19,...)

Aliases : ABCB19, ATABCB19, MDR1, MDR11, ATPGP19, ATMDR1, ATMDR11, PGP19, LOC_Os04g54930

Description : subfamily ABCB transporter

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g54930.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00263610	ABCB19,...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
AMTR_s00049p00128080	evm_27.TU.AmTr_v1...	Putative multidrug resistance protein OS=Oryza sativa...	0.05	OrthoFinder output from all 47 species
AT3G28345	No alias	ABC transporter family protein	0.02	OrthoFinder output from all 47 species
Adi_g076577	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g112185	ABCB19,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g26174	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Als_g05763	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Als_g14092	PGP21	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g09164	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g32929	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene15961.t1	ABCB19,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene20710.t1	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene42787.t1	ATPGP4, PGP4,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene45615.t1	PGP11, Aspi01Gene45615	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene46795.t1	PGP2, Aspi01Gene46795	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene62054.t1	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0002.g001271	ABCB19,...	subfamily ABCB transporter & original description: CDS=82-3879	0.04	OrthoFinder output from all 47 species
Cba_g24784	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g14063	PGP11	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g21301	PGP2	subfamily ABCB transporter & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g08511	PGP11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g08658	PGP6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g08924	PGP20	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g31525	ATPGP4, PGP4, ABCB4, MDR4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g12010	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01011381001	ABCB19,...	Solute transport.primary active transport.ABC...	0.06	OrthoFinder output from all 47 species
GSVIVT01025040001	PGP20	Solute transport.primary active transport.ABC...	0.06	OrthoFinder output from all 47 species
Len_g41164	ATPGP4, PGP4, ABCB4, MDR4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g16090	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g40621	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Mp2g02910.1	ABCB19,...	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Mp2g06270.1	PGP20	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Msp_g32270	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g35589	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g03862	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g28031	ABCB19,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g41658	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g43029	PGP2	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g04029	PGP11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g42899	No alias	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Pp3c17_16450V3.1	ABCB19,...	ATP binding cassette subfamily B19	0.01	OrthoFinder output from all 47 species
Pp3c21_18190V3.1	ABCB19,...	ATP binding cassette subfamily B19	0.01	OrthoFinder output from all 47 species
Ppi_g03284	PGP13	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g51926	ATPGP4, PGP4, ABCB4, MDR4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g60298	PGP2	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000035	PGP13	subfamily ABCB transporter & original description: CDS=555-4511	0.02	OrthoFinder output from all 47 species
Solyc05g013890.3.1	Solyc05g013890	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Solyc09g008240.3.1	PGP1, ABCB1,...	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Solyc12g098840.3.1	PGP11, Solyc12g098840	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Spa_g08601	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g21974	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g08541	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e014797_P002	Zm00001e014797	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Zm00001e021746_P001	PGP1, ABCB1,...	ABC transporter B family member 2 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e041008_P003	ABCB19,...	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
Zm00001e041760_P001	ABCB19,...	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0016020	membrane	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	61	330
IPR003439	ABC_transporter-like_ATP-bd	400	547

External Links

No external refs found!

LOC_Os04g54930.1 (ABCB19, ATABCB19,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation