LOC_Os04g54510.1 (LOC_Os04g54510)

Aliases : LOC_Os04g54510

Description : transcription factor (mTERF)

Gene families : OG0000165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000165_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g54510.1

Target	Alias	Description	ECC score	Gene Family Method
Dcu_g13929	No alias	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g16486	PTAC15	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g22736	No alias	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g07033	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g17694	PTAC15	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01028380001	No alias	RNA biosynthesis.organelle...	0.04	OrthoFinder output from all 47 species
Lfl_g05600	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_10426325g0010	No alias	transcription factor (mTERF)	0.06	OrthoFinder output from all 47 species
Pnu_g07274	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015528	No alias	mTERF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Zm00001e010589_P001	Zm00001e010589	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Zm00001e018154_P001	Zm00001e018154	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Zm00001e018894_P001	Zm00001e018894	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Zm00001e022322_P001	Zm00001e022322	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003690	MTERF	88	216
IPR003690	MTERF	267	362

External Links

No external refs found!

LOC_Os04g54510.1 (LOC_Os04g54510)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation