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  5. LOC_Os04g53440.1

LOC_Os04g53440.1 (RBP45B, ATRBP45B,...)


Aliases : RBP45B, ATRBP45B, LOC_Os04g53440

Description : mRNA-binding regulatory factor (RBP45/47)


Gene families : OG0000531 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g53440.1

Target Alias Description ECC score Gene Family Method Actions
Cba_g07985 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.01 OrthoFinder output from all 47 species
Cre16.g652900 ATRBP45A, RBP45A Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01025280001 No alias Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Len_g10665 RBP45B, ATRBP45B not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05464 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
MA_10430323g0010 No alias mRNA-binding regulatory factor (RBP45/47) 0.04 OrthoFinder output from all 47 species
MA_29443g0010 ATRBP45C mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
Mp8g07840.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
Ore_g09196 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.06 OrthoFinder output from all 47 species
Pir_g17296 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Sam_g06637 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Sam_g39348 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Smo80061 ATRBP47C', RBP47C' Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.02 OrthoFinder output from all 47 species
Tin_g11164 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
BP GO:0006952 defense response IEP HCCA
CC GO:0008303 caspase complex IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0042765 GPI-anchor transamidase complex IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 286 328
IPR000504 RRM_dom 182 252
IPR000504 RRM_dom 92 158
No external refs found!