LOC_Os04g52800.1 (LOC_Os04g52800)


Aliases : LOC_Os04g52800

Description : no hits & (original description: none)


Gene families : OG0001961 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001961_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g52800.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00126p00114280 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G56020 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.02 OrthoFinder output from all 47 species
AT3G19200 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from all 47 species
AT3G50640 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.04 OrthoFinder output from all 47 species
AT4G34419 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from all 47 species
AT5G19340 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.04 OrthoFinder output from all 47 species
Adi_g116381 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06672 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15808 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g40600 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61199.t1 Aspi01Gene61199 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.08G052800.1 Ceric.08G052800 not classified & original description: pacid=50638079... 0.02 OrthoFinder output from all 47 species
Dac_g09049 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g05255 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g52490.2 LOC_Os02g52490 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os06g46250.1 LOC_Os06g46250 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g11864 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g59008 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g00615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g15147 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0076.g017462 No alias not classified & original description: CDS=1-2376 0.03 OrthoFinder output from all 47 species
Solyc06g054280.1.1 Solyc06g054280 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g05996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003802_P001 Zm00001e003802 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e015934_P003 Zm00001e015934 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e023821_P002 Zm00001e023821 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e025161_P001 Zm00001e025161 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e030336_P001 Zm00001e030336 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
CC GO:0048046 apoplast IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA

No InterPro domains available for this sequence

No external refs found!