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  5. LOC_Os04g52540.1

LOC_Os04g52540.1 (AGO2, LOC_Os04g52540)


Aliases : AGO2, LOC_Os04g52540

Description : siRNA-binding factor (AGO2) of non-canonical RdDM pathway


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os04g52540.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265690 PNH, AGO10, ZLL,... Chromatin organisation.DNA methylation.canonical... 0.03 OrthoFinder output from all 47 species
Adi_g024819 AGO9 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre04.g214250 AGO1 Protein argonaute 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
MA_10122566g0010 PNH, AGO10, ZLL Protein argonaute 10 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp1g23190.1 AGO9 siRNA-integrating factor (AGO) 0.03 OrthoFinder output from all 47 species
Msp_g13472 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Sam_g08413 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Zm00001e005271_P001 AGO1, Zm00001e005271 Protein argonaute 12 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Zm00001e017367_P001 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.03 OrthoFinder output from all 47 species
Zm00001e025496_P001 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004806 triglyceride lipase activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032474 Argonaute_N 206 330
IPR003165 Piwi 694 988
IPR032472 ArgoL2 532 577
IPR014811 ArgoL1 341 388
IPR003100 PAZ_dom 405 516
No external refs found!