AMTR_s00065p00020910 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00065.6

Description : Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0007364 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007364_tree ,
OG_02_0005355 (LandPlants) Phylogenetic Tree(s): OG_02_0005355_tree ,
OG_03_0010911 (SeedPlants) Phylogenetic Tree(s): OG_03_0010911_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00065p00020910
Cluster HCCA: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 Archaeplastida
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 Archaeplastida
LOC_Os09g25550.1 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 Archaeplastida
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 Archaeplastida
Solyc07g005950.4.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e040095_P002 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 Archaeplastida
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 LandPlants
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 LandPlants
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 LandPlants
LOC_Os09g25550.1 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 LandPlants
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 LandPlants
Solyc07g005950.4.1 No alias no hits & (original description: none) 0.04 LandPlants
Zm00001e040095_P002 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 LandPlants
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 SeedPlants
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 SeedPlants
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 SeedPlants
LOC_Os09g25550.1 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 SeedPlants
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 SeedPlants
Solyc07g005950.4.1 No alias no hits & (original description: none) 0.04 SeedPlants
Zm00001e040095_P002 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 341 388
IPR002885 Pentatricopeptide_repeat 764 805
IPR002885 Pentatricopeptide_repeat 834 877
IPR002885 Pentatricopeptide_repeat 660 689
IPR002885 Pentatricopeptide_repeat 315 339
IPR002885 Pentatricopeptide_repeat 556 582
IPR002885 Pentatricopeptide_repeat 244 270
IPR002885 Pentatricopeptide_repeat 274 303
IPR002885 Pentatricopeptide_repeat 695 718
IPR002885 Pentatricopeptide_repeat 206 235
IPR002885 Pentatricopeptide_repeat 728 753
IPR002885 Pentatricopeptide_repeat 590 621
No external refs found!