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  5. LOC_Os04g52200.1

LOC_Os04g52200.1 (LOC_Os04g52200)


Aliases : LOC_Os04g52200

Description : no hits & (original description: none)


Gene families : OG0005880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005880_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g52200.1

Target Alias Description ECC score Gene Family Method Actions
Als_g50338 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G030000.1 Ceric.28G030000 not classified & original description: pacid=50570416... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000893.5 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre16.g685200 No alias No description available 0.07 OrthoFinder output from all 47 species
GSVIVT01012163001 No alias Polyadenylate-binding protein 2 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Lfl_g16585 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g07831 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14275 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g081940.3.1 Solyc02g081940 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Spa_g15174 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e041627_P001 Zm00001e041627 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e042214_P001 Zm00001e042214 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 684 758
IPR000504 RRM_dom 783 850
IPR000504 RRM_dom 376 440
IPR000504 RRM_dom 564 626
IPR000504 RRM_dom 25 93
No external refs found!