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  5. LOC_Os04g49580.1

LOC_Os04g49580.1 (EMB2762, LOC_Os04g49580)


Aliases : EMB2762, LOC_Os04g49580

Description : SSU processome assembly factor (NOC4)


Gene families : OG0004927 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004927_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g49580.1

Target Alias Description ECC score Gene Family Method Actions
AT2G17250 EMB2762 CCAAT-binding factor 0.04 OrthoFinder output from all 47 species
Ala_g02072 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.04 OrthoFinder output from all 47 species
Aop_g14342 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.03 OrthoFinder output from all 47 species
Ceric.14G034900.1 EMB2762, Ceric.14G034900 SSU processome assembly factor *(NOC4) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000553.49 EMB2762 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Cre01.g068377 EMB2762 Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
Dcu_g03035 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.07 OrthoFinder output from all 47 species
GSVIVT01004114001 EMB2762 No description available 0.03 OrthoFinder output from all 47 species
Lfl_g06636 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.05 OrthoFinder output from all 47 species
MA_9224196g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp1g06620.1 EMB2762 SSU processome assembly factor (NOC4) 0.09 OrthoFinder output from all 47 species
Pir_g17550 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.03 OrthoFinder output from all 47 species
Solyc10g074560.2.1 EMB2762, Solyc10g074560 SSU processome assembly factor (NOC4) 0.07 OrthoFinder output from all 47 species
Spa_g04301 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.04 OrthoFinder output from all 47 species
Tin_g19274 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e041386_P001 EMB2762, Zm00001e041386 SSU processome assembly factor (NOC4) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005612 CCAAT-binding_factor 330 490
No external refs found!