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  5. LOC_Os04g49520.1

LOC_Os04g49520.1 (EMB2261, LOC_Os04g49520)


Aliases : EMB2261, LOC_Os04g49520

Description : Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana (sp|q9shz8|pp168_arath : 520.0)


Gene families : OG0027133 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0027133_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g49520.1
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Zm00001e007133_P001 VAC1, ECB2,... Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 104 132
IPR002885 Pentatricopeptide_repeat 438 465
IPR002885 Pentatricopeptide_repeat 309 335
IPR002885 Pentatricopeptide_repeat 337 363
IPR002885 Pentatricopeptide_repeat 643 668
IPR002885 Pentatricopeptide_repeat 543 565
IPR002885 Pentatricopeptide_repeat 409 437
IPR002885 Pentatricopeptide_repeat 234 282
IPR002885 Pentatricopeptide_repeat 467 515
IPR002885 Pentatricopeptide_repeat 568 616
IPR002885 Pentatricopeptide_repeat 68 97
IPR032867 DYW_dom 742 855
No external refs found!