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  5. LOC_Os04g49310.1

LOC_Os04g49310.1 (LOC_Os04g49310)


Aliases : LOC_Os04g49310

Description : Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana (sp|b6sfa4|maa3_arath : 106.0)


Gene families : OG0001121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g49310.1
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AT1G65810 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 OrthoFinder output from all 47 species
AT5G37030 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 OrthoFinder output from all 47 species
AT5G37140 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 OrthoFinder output from all 47 species
AT5G37165 No alias No description available 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000545.42 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021036.39 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g44434 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g45910.1 LOC_Os02g45910 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os04g51090.1 LOC_Os04g51090 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e007061_P002 Zm00001e007061 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Zm00001e007146_P001 Zm00001e007146 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Zm00001e010960_P001 Zm00001e010960 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e034966_P001 Zm00001e034966 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
Zm00001e041374_P001 Zm00001e041374 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041677 DNA2/NAM7_AAA_11 107 201
IPR041677 DNA2/NAM7_AAA_11 440 525
IPR041679 DNA2/NAM7-like_C 533 583
No external refs found!