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  5. LOC_Os04g49170.1

LOC_Os04g49170.1 (LOC_Os04g49170)


Aliases : LOC_Os04g49170

Description : no hits & (original description: none)


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g49170.1

Target Alias Description ECC score Gene Family Method Actions
AT1G53010 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g057160 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aev_g12633 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ala_g00767 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Als_g02259 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Als_g33921 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aob_g18039 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aop_g12044 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21168 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70090 ATL31, CNI1 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene16999.t2 ATL6, Aspi01Gene16999 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene37205.t2 Aspi01Gene37205 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Azfi_s0006.g010071 No alias not classified & original description: CDS=1-183 0.03 OrthoFinder output from all 47 species
Cba_g10446 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Cba_g56414 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G091800.1 Ceric.01G091800 not classified & original description: pacid=50591615... 0.02 OrthoFinder output from all 47 species
Ceric.03G012300.1 BRH1, Ceric.03G012300 not classified & original description: pacid=50572071... 0.03 OrthoFinder output from all 47 species
Ceric.05G063000.1 Ceric.05G063000 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.06G045100.1 Ceric.06G045100 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ceric.10G027700.1 Ceric.10G027700 not classified & original description: pacid=50612217... 0.03 OrthoFinder output from all 47 species
Ceric.21G003900.1 ATL6, Ceric.21G003900 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.22G069900.1 Ceric.22G069900 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Ceric.38G004700.1 Ceric.38G004700 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dac_g03534 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g33447 MEE16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19225 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26733 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ehy_g06581 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ehy_g06688 MEE16 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
GSVIVT01026703001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Gb_08038 No alias RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Gb_14785 No alias RING-H2 finger protein ATL78 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_28932 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_32878 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os01g61470.1 LOC_Os01g61470 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
LOC_Os11g02424.1 LOC_Os11g02424 RING-H2 finger protein ATL74 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
Len_g00972 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Len_g04219 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Len_g53832 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
MA_10021g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_124750g0010 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_17390g0010 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_61738g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_80729g0030 ATL2, TL2 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_88044g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Msp_g07983 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31921 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g36033 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g02407 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Nbi_g06650 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ore_g09566 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09567 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g29694 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g07714 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Pir_g20219 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Pir_g50189 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pnu_g12084 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ppi_g18666 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ppi_g21936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g35708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g04638 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo412606 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
Smo8844 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Solyc02g068415.1.1 RHA3A, Solyc02g068415 RING-H2 finger protein ATL73 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc04g082690.1.1 Solyc04g082690 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc06g051250.1.1 Solyc06g051250 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Solyc07g006360.1.1 Solyc07g006360 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc09g089890.1.1 Solyc09g089890 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc10g009487.1.1 Solyc10g009487 RING-H2 finger protein ATL20 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc11g005290.1.1 Solyc11g005290 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc11g005300.2.1 Solyc11g005300 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Spa_g10479 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g20845 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g22755 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Spa_g40874 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Tin_g03083 No alias RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.03 OrthoFinder output from all 47 species
Tin_g14638 No alias RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.04 OrthoFinder output from all 47 species
Tin_g36820 ATL8 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007103_P001 Zm00001e007103 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e007208_P002 Zm00001e007208 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e015905_P001 ATL31, CNI1,... RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Zm00001e023515_P001 Zm00001e023515 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e029032_P001 Zm00001e029032 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Zm00001e030750_P001 Zm00001e030750 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 111 161
No external refs found!