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  5. LOC_Os04g45990.1

LOC_Os04g45990.1 (SUVH5, SGD9, LOC_Os04g45990)


Aliases : SUVH5, SGD9, LOC_Os04g45990

Description : class V/Su(var) histone methyltransferase component of histone lysine methylation/demethylation


Gene families : OG0000291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000291_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g45990.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00104700 SUVH5, SGD9,... Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
AMTR_s00069p00076340 SDG33, SUVH4,... Enzyme classification.EC_2 transferases.EC_2.1... 0.04 OrthoFinder output from all 47 species
AT5G04940 SUVH1 SU(VAR)3-9 homolog 1 0.03 OrthoFinder output from all 47 species
Aev_g14466 SDG33, SUVH4, KYP EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene18047.t2 SDG33, SUVH4,... EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene31893.t1 SDG23, SUVH6,... EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene41391.t1 SDG33, SUVH4,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01027376001 SUVH1 Histone-lysine N-methyltransferase, H3 lysine-9 specific... 0.03 OrthoFinder output from all 47 species
Lfl_g27877 SDG33, SUVH4, KYP EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
MA_7658g0020 SUVH1 class V/Su(var) histone methyltransferase component of... 0.03 OrthoFinder output from all 47 species
Msp_g26677 SDG33, SUVH4, KYP EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Nbi_g07201 SDG23, SUVH6 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Ore_g35203 SUVH1 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Solyc02g094520.3.1 SDG33, SUVH4,... class V/Su(var) histone methyltransferase component of... 0.03 OrthoFinder output from all 47 species
Solyc09g090810.3.1 SET22, SDG22,... class V/Su(var) histone methyltransferase component of... 0.04 OrthoFinder output from all 47 species
Zm00001e007370_P001 SUVH5, SGD9,... class V/Su(var) histone methyltransferase component of... 0.04 OrthoFinder output from all 47 species
Zm00001e027327_P003 SUVH1, Zm00001e027327 class V/Su(var) histone methyltransferase component of... 0.03 OrthoFinder output from all 47 species
Zm00001e031994_P003 SUVH3, SDG19,... class V/Su(var) histone methyltransferase component of... 0.04 OrthoFinder output from all 47 species
Zm00001e033130_P002 SUVH3, SDG19,... class V/Su(var) histone methyltransferase component of... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0018024 histone lysine N-methyltransferase activity IEA Interproscan
BP GO:0034968 histone lysine methylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR007728 Pre-SET_dom 566 662
IPR001214 SET_dom 681 811
IPR003105 SRA_YDG 393 541
No external refs found!