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  5. LOC_Os04g43800.1

LOC_Os04g43800.1 (ATPAL1, PAL1, LOC_Os04g43800)


Aliases : ATPAL1, PAL1, LOC_Os04g43800

Description : phenylalanine ammonia lyase (PAL)


Gene families : OG0000270 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000270_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g43800.1
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00201680 ATPAL2, PAL2,... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 OrthoFinder output from all 47 species
AMTR_s00024p00201930 ATPAL2, PAL2,... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.06 OrthoFinder output from all 47 species
AMTR_s00024p00202590 ATPAL2, PAL2,... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.02 OrthoFinder output from all 47 species
AMTR_s00032p00159210 PAL4,... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.03 OrthoFinder output from all 47 species
AMTR_s00148p00088930 ATPAL1, PAL1,... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.03 OrthoFinder output from all 47 species
AT2G37040 ATPAL1, PAL1 PHE ammonia lyase 1 0.04 OrthoFinder output from all 47 species
AT3G10340 PAL4 phenylalanine ammonia-lyase 4 0.04 OrthoFinder output from all 47 species
AT5G04230 PAL3, ATPAL3 phenyl alanine ammonia-lyase 3 0.04 OrthoFinder output from all 47 species
Adi_g018720 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018721 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g01488 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g15105 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37417 ATPAL2, PAL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g39212 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g43680 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20991 ATPAL2, PAL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30887 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g37142 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50299 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g06672 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07268 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11634 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g14595 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02564 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene05558.t1 PAL4, Aspi01Gene05558 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18088.t1 ATPAL1, PAL1,... EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18089.t1 ATPAL1, PAL1,... EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23282.t1 PAL4, Aspi01Gene23282 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0009.g011807 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2211 0.08 OrthoFinder output from all 47 species
Azfi_s0063.g035292 PAL4 EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2358 0.03 OrthoFinder output from all 47 species
Azfi_s0096.g043679 PAL4 EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2310 0.06 OrthoFinder output from all 47 species
Azfi_s0163.g054246 PAL4 EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2322 0.05 OrthoFinder output from all 47 species
Azfi_s0205.g057722 PAL4 EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2322 0.05 OrthoFinder output from all 47 species
Cba_g04033 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22478 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g28767 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.14G035200.1 PAL4, Ceric.14G035200 EC_4.3 carbon-nitrogen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.28G008000.1 PAL4, Ceric.28G008000 EC_4.3 carbon-nitrogen lyase & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.28G008100.1 PAL4, Ceric.28G008100 EC_4.3 carbon-nitrogen lyase & original description:... 0.07 OrthoFinder output from all 47 species
Dac_g14924 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g27041 ATPAL2, PAL2 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g37006 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g40579 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01768 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g08202 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g24302 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g33771 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g35691 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36866 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16538 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17566 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25081 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01006148001 PAL4 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.03 OrthoFinder output from all 47 species
GSVIVT01015123001 PAL4 Phenylalanine ammonia-lyase OS=Pinus taeda 0.03 OrthoFinder output from all 47 species
GSVIVT01015124001 ATPAL2, PAL2 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.03 OrthoFinder output from all 47 species
GSVIVT01015138001 ATPAL2, PAL2 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.05 OrthoFinder output from all 47 species
GSVIVT01016257001 ATPAL2, PAL2 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.03 OrthoFinder output from all 47 species
GSVIVT01024295001 ATPAL1, PAL1 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.03 OrthoFinder output from all 47 species
GSVIVT01024299001 ATPAL1, PAL1 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 OrthoFinder output from all 47 species
GSVIVT01024303001 ATPAL1, PAL1 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 OrthoFinder output from all 47 species
GSVIVT01024305001 ATPAL1, PAL1 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.06 OrthoFinder output from all 47 species
GSVIVT01024306001 ATPAL1, PAL1 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 OrthoFinder output from all 47 species
GSVIVT01024315001 ATPAL1, PAL1 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 OrthoFinder output from all 47 species
GSVIVT01025214001 ATPAL1, PAL1 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.06 OrthoFinder output from all 47 species
GSVIVT01025703001 ATPAL2, PAL2 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.06 OrthoFinder output from all 47 species
Gb_01672 ATPAL2, PAL2 phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Gb_16672 ATPAL1, PAL1 phenylalanine ammonia lyase (PAL) 0.05 OrthoFinder output from all 47 species
Gb_21115 PAL4 phenylalanine ammonia lyase (PAL) 0.05 OrthoFinder output from all 47 species
Gb_31408 PAL4 phenylalanine ammonia lyase (PAL) 0.02 OrthoFinder output from all 47 species
LOC_Os02g41630.2 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.05 OrthoFinder output from all 47 species
LOC_Os02g41650.3 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
LOC_Os02g41670.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
LOC_Os02g41680.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
LOC_Os04g43760.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.06 OrthoFinder output from all 47 species
Len_g07383 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g29203 ATPAL1, PAL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g29204 PAL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g51078 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g57312 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g14564 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29485 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g30829 PAL4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10286132g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_189052g0010 ATPAL1, PAL1 Phenylalanine ammonia-lyase OS=Pinus taeda... 0.05 OrthoFinder output from all 47 species
MA_44561g0010 PAL4 phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
MA_73113g0010 PAL4 phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Mp1g05190.1 ATPAL1, PAL1 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Mp1g05220.1 PAL4 phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Mp1g10150.1 PAL4 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Mp3g18570.1 PAL4 Enzyme classification.EC_4 lyases.EC_4.3 carbon-nitrogen... 0.03 OrthoFinder output from all 47 species
Mp4g14110.1 ATPAL1, PAL1 phenylalanine ammonia lyase (PAL) 0.06 OrthoFinder output from all 47 species
Mp4g14130.1 ATPAL2, PAL2 Phenylalanine ammonia-lyase class 1 (Fragment)... 0.05 OrthoFinder output from all 47 species
Mp4g14140.1 ATPAL1, PAL1 phenylalanine ammonia lyase (PAL) 0.06 OrthoFinder output from all 47 species
Mp4g14160.1 ATPAL2, PAL2 phenylalanine ammonia lyase (PAL) 0.06 OrthoFinder output from all 47 species
Mp4g14170.1 PAL4 phenylalanine ammonia lyase (PAL) 0.07 OrthoFinder output from all 47 species
Mp4g14210.1 PAL4 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Mp7g14880.1 ATPAL1, PAL1 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Msp_g15679 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28220 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g29412 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g35210 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.07 OrthoFinder output from all 47 species
Msp_g43454 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g15973 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19081 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g21799 ATPAL1, PAL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g22188 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g36179 ATPAL2, PAL2 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40427 ATPAL2, PAL2 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40543 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g44841 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19939 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g26446 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g18294 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c10_21810V3.1 PAL4, Pp3c10_21810 phenylalanine ammonia-lyase 4 0.01 OrthoFinder output from all 47 species
Pp3c19_13690V3.1 PAL4, Pp3c19_13690 phenylalanine ammonia-lyase 4 0.01 OrthoFinder output from all 47 species
Pp3c21_7640V3.1 ATPAL2, PAL2, Pp3c21_7640 phenylalanine ammonia-lyase 2 0.01 OrthoFinder output from all 47 species
Ppi_g08363 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16617 ATPAL2, PAL2 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30570 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007129 PAL4 EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2310 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0067.g016271 PAL4 EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2382 0.03 OrthoFinder output from all 47 species
Solyc05g056170.3.1 ATPAL2, PAL2,... phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Solyc10g011920.3.1 ATPAL1, PAL1,... Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... 0.04 OrthoFinder output from all 47 species
Solyc10g011930.1.1 ATPAL1, PAL1,... Phenylalanine ammonia-lyase OS=Solanum lycopersicum... 0.05 OrthoFinder output from all 47 species
Spa_g08001 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g16564 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26458 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g03458 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08349 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g10052 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g14732 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e005064_P001 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Zm00001e007572_P001 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Zm00001e015155_P001 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Zm00001e015157_P001 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Zm00001e023031_P002 PAL4, Zm00001e023031 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004097 catechol oxidase activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR001106 Aromatic_Lyase 63 528
No external refs found!