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  5. LOC_Os04g43760.1

LOC_Os04g43760.1 (ATPAL1, PAL1, LOC_Os04g43760)


Aliases : ATPAL1, PAL1, LOC_Os04g43760

Description : phenylalanine ammonia lyase (PAL)


Gene families : OG0000270 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000270_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g43760.1
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00201680 ATPAL2, PAL2,... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.07 OrthoFinder output from all 47 species
AMTR_s00024p00201930 ATPAL2, PAL2,... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 OrthoFinder output from all 47 species
AMTR_s00024p00202590 ATPAL2, PAL2,... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 OrthoFinder output from all 47 species
AMTR_s00032p00159210 PAL4,... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 OrthoFinder output from all 47 species
AMTR_s00148p00088930 ATPAL1, PAL1,... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 OrthoFinder output from all 47 species
AT2G37040 ATPAL1, PAL1 PHE ammonia lyase 1 0.12 OrthoFinder output from all 47 species
AT3G10340 PAL4 phenylalanine ammonia-lyase 4 0.03 OrthoFinder output from all 47 species
AT3G53260 ATPAL2, PAL2 phenylalanine ammonia-lyase 2 0.09 OrthoFinder output from all 47 species
Adi_g018720 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036218 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059316 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g084112 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g107906 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g15105 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37417 ATPAL2, PAL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g39212 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g39213 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24727 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g34002 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g37142 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g37161 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06672 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g11634 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23707 ATPAL2, PAL2 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02564 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g27204 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05558.t1 PAL4, Aspi01Gene05558 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18088.t1 ATPAL1, PAL1,... EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18089.t1 ATPAL1, PAL1,... EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20030.t1 PAL4, Aspi01Gene20030 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0009.g011807 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2211 0.02 OrthoFinder output from all 47 species
Azfi_s0096.g043679 PAL4 EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2310 0.08 OrthoFinder output from all 47 species
Azfi_s0163.g054246 PAL4 EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2322 0.03 OrthoFinder output from all 47 species
Azfi_s0205.g057722 PAL4 EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2322 0.03 OrthoFinder output from all 47 species
Cba_g03360 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g04033 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g22478 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g28767 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.08 OrthoFinder output from all 47 species
Ceric.28G008100.1 PAL4, Ceric.28G008100 EC_4.3 carbon-nitrogen lyase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.35G045000.1 PAL4, Ceric.35G045000 EC_4.3 carbon-nitrogen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g09400 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g14924 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g23175 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g40579 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01768 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.13 OrthoFinder output from all 47 species
Dcu_g24302 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g35691 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g04952 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08593 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g25215 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01015123001 PAL4 Phenylalanine ammonia-lyase OS=Pinus taeda 0.03 OrthoFinder output from all 47 species
GSVIVT01015124001 ATPAL2, PAL2 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 OrthoFinder output from all 47 species
GSVIVT01015138001 ATPAL2, PAL2 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.07 OrthoFinder output from all 47 species
GSVIVT01016257001 ATPAL2, PAL2 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.03 OrthoFinder output from all 47 species
GSVIVT01025214001 ATPAL1, PAL1 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.08 OrthoFinder output from all 47 species
GSVIVT01025703001 ATPAL2, PAL2 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.19 OrthoFinder output from all 47 species
Gb_01672 ATPAL2, PAL2 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Gb_16672 ATPAL1, PAL1 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Gb_21115 PAL4 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Gb_31408 PAL4 phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Gb_41796 PAL4 phenylalanine ammonia lyase (PAL) 0.08 OrthoFinder output from all 47 species
LOC_Os02g41670.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.05 OrthoFinder output from all 47 species
LOC_Os04g43800.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.06 OrthoFinder output from all 47 species
LOC_Os05g35290.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.06 OrthoFinder output from all 47 species
Len_g07383 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Len_g29204 PAL4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g49566 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g50108 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g51078 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Len_g59256 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g14564 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.1 OrthoFinder output from all 47 species
Lfl_g29485 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
MA_10286132g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10429279g0010 PAL4 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
MA_123220g0010 ATPAL2, PAL2 phenylalanine ammonia lyase (PAL) 0.09 OrthoFinder output from all 47 species
MA_189052g0010 ATPAL1, PAL1 Phenylalanine ammonia-lyase OS=Pinus taeda... 0.04 OrthoFinder output from all 47 species
MA_44561g0010 PAL4 phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
MA_73113g0010 PAL4 phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Mp1g05190.1 ATPAL1, PAL1 phenylalanine ammonia lyase (PAL) 0.06 OrthoFinder output from all 47 species
Mp1g05220.1 PAL4 phenylalanine ammonia lyase (PAL) 0.05 OrthoFinder output from all 47 species
Mp1g10150.1 PAL4 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Mp4g14110.1 ATPAL1, PAL1 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Mp4g14130.1 ATPAL2, PAL2 Phenylalanine ammonia-lyase class 1 (Fragment)... 0.03 OrthoFinder output from all 47 species
Mp4g14140.1 ATPAL1, PAL1 phenylalanine ammonia lyase (PAL) 0.05 OrthoFinder output from all 47 species
Mp4g14160.1 ATPAL2, PAL2 phenylalanine ammonia lyase (PAL) 0.05 OrthoFinder output from all 47 species
Mp4g14170.1 PAL4 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Mp4g14210.1 PAL4 phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Mp7g14880.1 ATPAL1, PAL1 phenylalanine ammonia lyase (PAL) 0.02 OrthoFinder output from all 47 species
Msp_g28220 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31510 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g33722 ATPAL1, PAL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g37393 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08420 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15973 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g04296 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g22188 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35799 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g40543 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40658 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57491 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g09053 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g18294 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g03356 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08363 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10129 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g21194 PAL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30570 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57238 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0091.g018764 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2271 0.07 OrthoFinder output from all 47 species
Solyc05g056170.3.1 ATPAL2, PAL2,... phenylalanine ammonia lyase (PAL) 0.09 OrthoFinder output from all 47 species
Solyc09g007910.4.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Solyc09g007920.4.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Solyc10g011920.3.1 ATPAL1, PAL1,... Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... 0.07 OrthoFinder output from all 47 species
Solyc10g011930.1.1 ATPAL1, PAL1,... Phenylalanine ammonia-lyase OS=Solanum lycopersicum... 0.06 OrthoFinder output from all 47 species
Solyc10g086180.2.1 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.05 OrthoFinder output from all 47 species
Spa_g08001 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16564 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26458 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g08349 PAL4 EC_4.3 carbon-nitrogen lyase & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g14732 ATPAL1, PAL1 EC_4.3 carbon-nitrogen lyase & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e005064_P001 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Zm00001e007572_P001 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.05 OrthoFinder output from all 47 species
Zm00001e015154_P001 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.03 OrthoFinder output from all 47 species
Zm00001e015155_P001 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.08 OrthoFinder output from all 47 species
Zm00001e015157_P001 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.05 OrthoFinder output from all 47 species
Zm00001e023031_P002 PAL4, Zm00001e023031 phenylalanine ammonia lyase (PAL) 0.04 OrthoFinder output from all 47 species
Zm00001e023033_P001 ATPAL1, PAL1,... phenylalanine ammonia lyase (PAL) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP HCCA
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001106 Aromatic_Lyase 55 530
No external refs found!