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  5. LOC_Os04g43300.1

LOC_Os04g43300.1 (BARD1, ROW1, ATBARD1,...)


Aliases : BARD1, ROW1, ATBARD1, LOC_Os04g43300

Description : component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response heterodimer


Gene families : OG0001776 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001776_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g43300.1
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00180030 BRCA1, ATBRCA1,... DNA damage response.BRCA1–BARD1 DNA-damage response... 0.03 OrthoFinder output from all 47 species
AMTR_s00092p00067800 BRCA1, ATBRCA1,... DNA damage response.BRCA1–BARD1 DNA-damage response... 0.15 OrthoFinder output from all 47 species
AT1G04020 BARD1, ROW1, ATBARD1 breast cancer associated RING 1 0.21 OrthoFinder output from all 47 species
AT4G21070 BRCA1, ATBRCA1 breast cancer susceptibility1 0.02 OrthoFinder output from all 47 species
Aev_g22116 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Als_g14546 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Als_g16524 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.16 OrthoFinder output from all 47 species
Als_g44317 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Aop_g08732 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.16 OrthoFinder output from all 47 species
Aop_g10443 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.1 OrthoFinder output from all 47 species
Aspi01Gene06963.t1 BRCA1, ATBRCA1,... component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.11 OrthoFinder output from all 47 species
Aspi01Gene29593.t1 BRCA1, ATBRCA1,... component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.06 OrthoFinder output from all 47 species
Aspi01Gene40923.t1 BARD1, ROW1,... component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.01 OrthoFinder output from all 47 species
Ceric.06G016800.1 BRCA1, ATBRCA1,... component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.04 OrthoFinder output from all 47 species
Ceric.16G078600.1 BARD1, ROW1,... component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.12 OrthoFinder output from all 47 species
Ceric.19G066200.1 BRCA1, ATBRCA1,... component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.12 OrthoFinder output from all 47 species
Ceric.30G011100.1 BARD1, ROW1,... component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.15 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020537.14 No alias DNA damage response.BRCA1–BARD1 DNA-damage response... 0.06 OrthoFinder output from all 47 species
Cre07.g334650 No alias DNA damage response.BRCA1–BARD1 DNA-damage response... 0.04 OrthoFinder output from all 47 species
Dac_g10577 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.09 OrthoFinder output from all 47 species
Dac_g15330 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.05 OrthoFinder output from all 47 species
Dcu_g10242 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.18 OrthoFinder output from all 47 species
Dcu_g42186 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.08 OrthoFinder output from all 47 species
Gb_00493 BRCA1, ATBRCA1 component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.15 OrthoFinder output from all 47 species
LOC_Os05g43610.1 BRCA1, ATBRCA1,... component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.04 OrthoFinder output from all 47 species
Len_g03899 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.06 OrthoFinder output from all 47 species
Len_g11293 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.04 OrthoFinder output from all 47 species
MA_12220g0020 BRCA1, ATBRCA1 component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.16 OrthoFinder output from all 47 species
MA_187851g0010 BRCA1, ATBRCA1 Protein BREAST CANCER SUSCEPTIBILITY 1 homolog... 0.13 OrthoFinder output from all 47 species
MA_66542g0010 BRCA1, ATBRCA1 Protein BREAST CANCER SUSCEPTIBILITY 1 homolog... 0.12 OrthoFinder output from all 47 species
Mp1g00070.1 BRCA1, ATBRCA1 component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.17 OrthoFinder output from all 47 species
Msp_g15829 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.14 OrthoFinder output from all 47 species
Nbi_g12141 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.07 OrthoFinder output from all 47 species
Nbi_g26771 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.16 OrthoFinder output from all 47 species
Ppi_g16822 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007705 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008687 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018874 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.09 OrthoFinder output from all 47 species
Smo414577 BARD1, ROW1, ATBARD1 Protein biosynthesis.translation... 0.04 OrthoFinder output from all 47 species
Solyc06g008210.4.1 BARD1, ROW1,... component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.07 OrthoFinder output from all 47 species
Spa_g04261 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.16 OrthoFinder output from all 47 species
Tin_g03296 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquiTination... 0.03 OrthoFinder output from all 47 species
Tin_g32798 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquiTination... 0.11 OrthoFinder output from all 47 species
Zm00001e007590_P001 BARD1, ROW1,... component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.06 OrthoFinder output from all 47 species
Zm00001e032102_P001 BRCA1, ATBRCA1,... component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 24 61
IPR001357 BRCT_dom 423 492
No external refs found!