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  5. LOC_Os04g43130.1

LOC_Os04g43130.1 (LUH, LOC_Os04g43130)


Aliases : LUH, LOC_Os04g43130

Description : transcriptional co-repressor (LUG)


Gene families : OG0000790 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000790_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g43130.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00252820 LUG, RON2,... RNA biosynthesis.transcriptional repression.LUG... 0.03 OrthoFinder output from all 47 species
AT4G32551 LUG, RON2 LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.02 OrthoFinder output from all 47 species
Azfi_s0074.g037523 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.05 OrthoFinder output from all 47 species
Cba_g06869 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Cba_g35403 LUG, RON2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01028646001 LUH RNA biosynthesis.transcriptional repression.LUG... 0.03 OrthoFinder output from all 47 species
Len_g18018 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
MA_704500g0010 LUH transcriptional co-repressor (LUG) 0.02 OrthoFinder output from all 47 species
MA_950191g0010 LUH transcriptional co-repressor (LUG) 0.02 OrthoFinder output from all 47 species
Mp1g15050.1 LUG, RON2 transcriptional co-repressor (LUG) 0.02 OrthoFinder output from all 47 species
Solyc06g083460.4.1 LUH, Solyc06g083460 transcriptional co-repressor (LUG) 0.02 OrthoFinder output from all 47 species
Tin_g21241 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Zm00001e016200_P001 LUH, Zm00001e016200 transcriptional co-repressor (LUG) 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008064 regulation of actin polymerization or depolymerization IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0030832 regulation of actin filament length IEP HCCA
BP GO:0030833 regulation of actin filament polymerization IEP HCCA
BP GO:0032271 regulation of protein polymerization IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
BP GO:0032956 regulation of actin cytoskeleton organization IEP HCCA
BP GO:0032970 regulation of actin filament-based process IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0043254 regulation of protein-containing complex assembly IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
MF GO:0051011 microtubule minus-end binding IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051493 regulation of cytoskeleton organization IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
BP GO:0110053 regulation of actin filament organization IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1902903 regulation of supramolecular fiber organization IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 677 710
IPR001680 WD40_repeat 760 793
IPR001680 WD40_repeat 513 544
IPR001680 WD40_repeat 594 630
IPR001680 WD40_repeat 551 586
IPR006594 LisH 10 35
No external refs found!