LOC_Os04g42320.1 (LOC_Os04g42320)


Aliases : LOC_Os04g42320

Description : cohesin cofactor (PDS5)


Gene families : OG0000616 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000616_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g42320.1
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AT4G31880 No alias LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant... 0.02 OrthoFinder output from all 47 species
Als_g62298 No alias cohesin cofactor *(PDS5) & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g13153 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s2755.g112945 No alias cohesin cofactor *(PDS5) & original description: CDS=554-2284 0.04 OrthoFinder output from all 47 species
Ehy_g25801 No alias cohesin cofactor *(PDS5) & original description: none 0.01 OrthoFinder output from all 47 species
Gb_06732 No alias cohesin cofactor (PDS5) 0.05 OrthoFinder output from all 47 species
Len_g21353 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g21968 No alias cohesin cofactor *(PDS5) & original description: none 0.01 OrthoFinder output from all 47 species
Len_g58587 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g28747 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g28581 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17323 No alias cohesin cofactor *(PDS5) & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g26080 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g57308 No alias cohesin cofactor *(PDS5) & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g14013 No alias cohesin cofactor *(PDS5) & original description: none 0.01 OrthoFinder output from all 47 species
Solyc06g065710.3.1 Solyc06g065710 cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
Spa_g09451 No alias cohesin cofactor *(PDS5) & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g02194 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11324 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g20983 No alias cohesin cofactor *(PDS5) & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!