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  5. LOC_Os04g41560.2

LOC_Os04g41560.2 (STO, LOC_Os04g41560)


Aliases : STO, LOC_Os04g41560

Description : transcription factor (BBX-DBB)


Gene families : OG0000403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000403_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g41560.2
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00182p00043350 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
Adi_g057496 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g20960 STO BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g33521 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g02369 STO BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06573 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11974 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene08384.t1 LZF1, STH3,... BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62651.t2 Aspi01Gene62651 BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0133.g049310 LZF1, STH3, DBB3 BBX class-IV transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0185.g056620 STO BBX class-IV transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.11G021600.1 Ceric.11G021600 BBX class-IV transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.17G005800.1 STO, Ceric.17G005800 BBX class-IV transcription factor & original... 0.06 OrthoFinder output from all 47 species
Dac_g21582 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02213 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024173001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
Len_g31145 STH BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g00501 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g21663 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g07843 No alias BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20142 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28592 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10682 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12390 STO BBX class-IV transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g19854 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g11699 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32526 STH BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19076 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26639 No alias BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g41002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo271535 STO RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
Solyc12g089240.2.1 STH2, Solyc12g089240 transcription factor (BBX-DBB) 0.05 OrthoFinder output from all 47 species
Spa_g30262 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56814 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e007720_P001 STO, Zm00001e007720 transcription factor (BBX-DBB) 0.04 OrthoFinder output from all 47 species
Zm00001e022915_P001 STO, Zm00001e022915 transcription factor (BBX-DBB) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 56 96
IPR000315 Znf_B-box 4 47
No external refs found!