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  5. LOC_Os04g41250.1

LOC_Os04g41250.1 (ATPUB45, PUB45, LOC_Os04g41250)


Aliases : ATPUB45, PUB45, LOC_Os04g41250

Description : U-box domain-containing protein 7 OS=Arabidopsis thaliana (sp|q9cag5|pub7_arath : 552.0)


Gene families : OG0002832 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002832_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g41250.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AT1G67530 No alias ARM repeat superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g057937 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g51166 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12229 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g43192 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g07545 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g13059 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06119 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03968 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g15193 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04138 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Mp5g16810.1 ATPUB45, PUB45 U-box domain-containing protein 45 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Nbi_g05453 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g08183 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Solyc05g015070.4.1 Solyc05g015070 U-box domain-containing protein 6 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e007747_P003 ATPUB45, PUB45,... U-box domain-containing protein 6 OS=Arabidopsis... 0.15 OrthoFinder output from all 47 species
Zm00001e018944_P001 ATPUB45, PUB45,... U-box domain-containing protein 45 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e041111_P003 ATPUB45, PUB45,... U-box domain-containing protein 7 OS=Arabidopsis... 0.22 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 280 349
No external refs found!