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  5. LOC_Os04g41040.1

LOC_Os04g41040.1 (NRPD5, ATRPABC24.3,...)


Aliases : NRPD5, ATRPABC24.3, NRPB5, RPB5A, LOC_Os04g41040

Description : subunit 5 of RNA polymerase


Gene families : OG0003853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003853_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g41040.1

Target Alias Description ECC score Gene Family Method Actions
Mp7g17520.1 NRPD5,... subunit 5 of RNA polymerase 0.02 OrthoFinder output from all 47 species
Solyc05g051790.3.1 NRPD5,... subunit 5 of RNA polymerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005761 mitochondrial ribosome IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
InterPro domains Description Start Stop
IPR000783 RNA_pol_subH/Rpb5_C 132 204
IPR005571 RNA_pol_Rpb5_N 4 89
No external refs found!