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  5. LOC_Os04g39670.1

LOC_Os04g39670.1 (UVI4, PYM, LOC_Os04g39670)


Aliases : UVI4, PYM, LOC_Os04g39670

Description : OSD1 (APC/C)-dependent ubiquitination regulating protein


Gene families : OG0013890 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0013890_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g39670.1
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00227480 UVI4, PYM,... Cell cycle.mitosis and meiosis.metaphase to anaphase... 0.2 OrthoFinder output from all 47 species
AT2G42260 UVI4, PYM uv-b-insensitive 4 0.09 OrthoFinder output from all 47 species
AT3G57860 OSD1, UVI4-LIKE UV-B-insensitive 4-like 0.14 OrthoFinder output from all 47 species
GSVIVT01033358001 UVI4, PYM Cell cycle.mitosis and meiosis.metaphase to anaphase... 0.02 OrthoFinder output from all 47 species
Solyc10g080400.2.1 UVI4, PYM, Solyc10g080400 OSD1 (APC/C)-dependent ubiquitination regulating protein 0.16 OrthoFinder output from all 47 species
Zm00001e007830_P001 UVI4, PYM, Zm00001e007830 OSD1 (APC/C)-dependent ubiquitination regulating protein 0.13 OrthoFinder output from all 47 species
Zm00001e014975_P001 UVI4, PYM, Zm00001e014975 OSD1 (APC/C)-dependent ubiquitination regulating protein 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA

No InterPro domains available for this sequence

No external refs found!