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  5. LOC_Os04g39160.1

LOC_Os04g39160.1 (SMD1, RDR2, LOC_Os04g39160)


Aliases : SMD1, RDR2, LOC_Os04g39160

Description : ssRNA polymerase (RDR2)


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g39160.1

Target Alias Description ECC score Gene Family Method Actions
AT3G49500 SDE1, RDR6, SGS2 RNA-dependent RNA polymerase 6 0.03 OrthoFinder output from all 47 species
Ala_g33594 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g39991 ATRDRP1, RDR1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0027.g023716 ATRDRP1, RDR1 not classified & original description: CDS=253-3705 0.03 OrthoFinder output from all 47 species
Ehy_g07935 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14066 ATRDRP1, RDR1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19796 ATRDRP1, RDR1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007792001 SMD1, RDR2 RNA biosynthesis.siRNA biogenesis.RDR2 ssRNA polymerase 0.04 OrthoFinder output from all 47 species
Gb_28429 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Gb_28430 ATRDRP1, RDR1 Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Len_g14350 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g15315 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g17422 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g114140.3.1 SMD1, RDR2,... ssRNA polymerase (RDR2) 0.04 OrthoFinder output from all 47 species
Spa_g10285 SMD1, RDR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08538 ATRDRP1, RDR1 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 381 957
No external refs found!