LOC_Os02g10080.1


Description : C3H zinc finger transcription factor


Gene families : OG_01_0001099 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001099_tree ,
OG_02_0001093 (LandPlants) Phylogenetic Tree(s): OG_02_0001093_tree ,
OG_03_0001843 (SeedPlants) Phylogenetic Tree(s): OG_03_0001843_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g10080.1
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
Gb_25567 No alias C3H zinc finger transcription factor 0.02 Archaeplastida
MA_159838g0010 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
MA_26803g0010 No alias C3H zinc finger transcription factor 0.05 Archaeplastida
MA_68032g0010 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
MA_83924g0010 No alias C3H zinc finger transcription factor 0.02 Archaeplastida
Solyc01g014850.4.1 No alias C3H zinc finger transcription factor 0.02 Archaeplastida
Solyc01g073940.3.1 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
Solyc03g063200.3.1 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
Zm00001e006629_P001 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
Zm00001e037586_P002 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
AT3G12130 No alias KH domain-containing protein / zinc finger (CCCH type)... 0.02 LandPlants
Gb_25567 No alias C3H zinc finger transcription factor 0.02 LandPlants
MA_159838g0010 No alias C3H zinc finger transcription factor 0.03 LandPlants
MA_26803g0010 No alias C3H zinc finger transcription factor 0.05 LandPlants
MA_68032g0010 No alias C3H zinc finger transcription factor 0.03 LandPlants
MA_83924g0010 No alias C3H zinc finger transcription factor 0.02 LandPlants
Solyc01g014850.4.1 No alias C3H zinc finger transcription factor 0.02 LandPlants
Solyc01g073940.3.1 No alias C3H zinc finger transcription factor 0.03 LandPlants
Solyc03g063200.3.1 No alias C3H zinc finger transcription factor 0.04 LandPlants
Zm00001e006629_P001 No alias C3H zinc finger transcription factor 0.03 LandPlants
Zm00001e037586_P002 No alias C3H zinc finger transcription factor 0.03 LandPlants
AMTR_s00022p00176740 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 SeedPlants
AT3G12130 No alias KH domain-containing protein / zinc finger (CCCH type)... 0.02 SeedPlants
Gb_25567 No alias C3H zinc finger transcription factor 0.02 SeedPlants
MA_159838g0010 No alias C3H zinc finger transcription factor 0.02 SeedPlants
MA_68032g0010 No alias C3H zinc finger transcription factor 0.02 SeedPlants
Solyc01g073940.3.1 No alias C3H zinc finger transcription factor 0.03 SeedPlants
Solyc03g063200.3.1 No alias C3H zinc finger transcription factor 0.04 SeedPlants
Zm00001e006629_P001 No alias C3H zinc finger transcription factor 0.03 SeedPlants
Zm00001e037586_P002 No alias C3H zinc finger transcription factor 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 173 236
IPR000571 Znf_CCCH 266 291
IPR000571 Znf_CCCH 101 126
No external refs found!